DavidQuigley / WCDT_WGBS
West Coast Dream Team Whole Genome Bisulfite Sequencing
☆15Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for WCDT_WGBS
- ☆10Updated 3 weeks ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆15Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- ☆17Updated 5 years ago
- RNA editing tests☆16Updated 4 years ago
- ☆22Updated last year
- ☆15Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆18Updated 4 years ago
- ☆13Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last month
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆17Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆13Updated 2 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 2 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆11Updated 3 years ago