ndokmai / sgx-genome-variants-searchLinks
☆19Updated last year
Alternatives and similar repositories for sgx-genome-variants-search
Users that are interested in sgx-genome-variants-search are comparing it to the libraries listed below
Sorting:
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018☆20Updated 7 years ago
- ☆12Updated 3 years ago
- A k-mer frequency statistics software☆15Updated 4 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- ☆14Updated 5 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆44Updated 2 years ago
- ☆12Updated 2 years ago
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- micro-read Fast Alignment Search Tool☆19Updated 6 years ago
- GBWT-based handle graph☆31Updated this week
- ☆15Updated 4 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆53Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆39Updated 4 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- ☆18Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Experimental String Graph construction and processing☆26Updated 2 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆35Updated 11 months ago
- MEM mapper prototype☆13Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago