ndokmai / sgx-genome-variants-search
☆19Updated 9 months ago
Alternatives and similar repositories for sgx-genome-variants-search:
Users that are interested in sgx-genome-variants-search are comparing it to the libraries listed below
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- Simulating the expected output from a GWAS with a given causal model.☆10Updated 3 years ago
- Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018☆20Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- ☆12Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 8 months ago
- ☆12Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- ☆13Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆9Updated 10 months ago
- ☆16Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 3 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Updated 4 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- Code for RNA-seq gene coexpression analysis☆9Updated 3 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆42Updated last year
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆14Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆11Updated 9 months ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆15Updated 10 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated 11 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Updated 2 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago