ndokmai / sgx-genome-variants-searchLinks
☆19Updated last year
Alternatives and similar repositories for sgx-genome-variants-search
Users that are interested in sgx-genome-variants-search are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 years ago
- Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018☆20Updated 7 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28Updated 5 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 3 years ago
- A k-mer frequency statistics software☆15Updated 4 years ago
- ☆12Updated 2 years ago
- ☆15Updated 4 years ago
- ☆18Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- ☆36Updated last year
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆11Updated 7 months ago
- Accelerated genomics workflows in the Workflow Description Language☆35Updated last week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 5 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 4 years ago