dekkerlab / matrix_paper
Scripts and notebooks used in Akgol Oksuz et al. paper
☆11Updated 4 years ago
Alternatives and similar repositories for matrix_paper:
Users that are interested in matrix_paper are comparing it to the libraries listed below
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 10 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- A toolkit for analyzing architectural stripes☆19Updated 4 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- ☆17Updated 4 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- Quantify the Concurrence of DNA Methylation and De-methylation☆8Updated 2 years ago
- Peak calling for 4C data☆12Updated 6 years ago
- ☆20Updated 4 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- ☆21Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 6 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 7 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- ChIA-PET Utilities☆13Updated 3 years ago
- ☆11Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- ☆11Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated 11 months ago