dieterich-lab / circtoolsLinks
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
☆27Updated last year
Alternatives and similar repositories for circtools
Users that are interested in circtools are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 5 months ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- ☆40Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆44Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆50Updated 7 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- ☆38Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Mutational signature analysis for low statistics SNV data☆63Updated 10 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- ATAC-seq lab for BIOINF545☆25Updated 3 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated last week
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆33Updated 3 years ago
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆23Updated 6 years ago