zhengrongbin / MEBOCOSTLinks
A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆78Updated 4 months ago
Alternatives and similar repositories for MEBOCOST
Users that are interested in MEBOCOST are comparing it to the libraries listed below
Sorting:
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- ☆59Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- ☆126Updated 3 years ago
- Assessing the purity of single cell population☆138Updated 3 years ago
- ☆64Updated 6 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Accurate and fast cell marker gene identification with COSG☆53Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- Codes used in pan-T cell analysis☆64Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆71Updated 4 years ago
- R implementation of GeneTrajectory☆67Updated last year
- Codes for the scPLC project☆71Updated 3 years ago
- ☆31Updated 3 years ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago