A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆80Jul 25, 2025Updated 8 months ago
Alternatives and similar repositories for MEBOCOST
Users that are interested in MEBOCOST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆148Nov 10, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆39Nov 26, 2025Updated 4 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆124Oct 31, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Quantifying metabolism activity at the single-cell resolution☆172Feb 18, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- ☆136Apr 24, 2024Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆99Feb 23, 2026Updated last month
- Metacell - Single-cell mRNA Analysis☆120Mar 16, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆186Mar 27, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆40Aug 23, 2023Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆22Aug 24, 2020Updated 5 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- R implementation of GeneTrajectory☆69Apr 5, 2024Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 weeks ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆637Nov 12, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆20Dec 5, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆427Apr 13, 2026Updated last week
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆155Feb 15, 2022Updated 4 years ago
- ☆22Sep 20, 2022Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- ☆30Jul 15, 2021Updated 4 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆193Jan 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆46May 4, 2024Updated last year
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆217Sep 15, 2024Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆122Updated this week
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year