A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆84Jul 25, 2025Updated last year
Alternatives and similar repositories for MEBOCOST
Users that are interested in MEBOCOST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single cell Flux Estimation Analysis (scFEA)☆156Nov 10, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 10 months ago
- ☆45Nov 26, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated last year
- ☆144Jun 25, 2026Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆109Apr 16, 2026Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆264Jan 16, 2026Updated 7 months ago
- Metacell - Single-cell mRNA Analysis☆123Aug 25, 2026Updated last week
- Quantifying metabolism activity at the single-cell resolution☆195Aug 20, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆33Aug 16, 2021Updated 5 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆42Aug 23, 2023Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Aug 24, 2026Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆131Aug 3, 2026Updated last month
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- Methods to discover gene programs on single-cell data☆208Jul 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 3 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 3 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LIANA: a LIgand-receptor ANalysis frAmework☆248Aug 7, 2024Updated 2 years ago
- ☆23Sep 20, 2022Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated last year
- ☆46May 4, 2024Updated 2 years ago