A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆83Jul 25, 2025Updated last year
Alternatives and similar repositories for MEBOCOST
Users that are interested in MEBOCOST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single cell Flux Estimation Analysis (scFEA)☆156Nov 10, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 8 months ago
- ☆44Nov 26, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated 11 months ago
- An R library for conducting analyses on COMPASS data.☆17Jun 10, 2021Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆142Jun 25, 2026Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- Metacell - Single-cell mRNA Analysis☆121Jul 15, 2026Updated 2 weeks ago
- Quantifying metabolism activity at the single-cell resolution☆191Feb 18, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆123Jan 22, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Jul 20, 2026Updated last week
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Mar 28, 2026Updated 4 months ago
- Methods to discover gene programs on single-cell data☆199Jul 21, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 2 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆245Aug 7, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 29, 2023Updated 2 years ago
- ☆23Sep 20, 2022Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- A tool for detecting somatic variants in single cell data☆224Sep 15, 2024Updated last year
- ☆46May 4, 2024Updated 2 years ago