zhengrongbin / MEBOCOST
A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆71Updated 2 months ago
Alternatives and similar repositories for MEBOCOST:
Users that are interested in MEBOCOST are comparing it to the libraries listed below
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- ☆59Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆93Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆61Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆39Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆69Updated 5 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- ☆49Updated 4 months ago
- ☆114Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆119Updated 6 months ago
- Methods for decontamination of single cell data☆37Updated 2 months ago
- Methods to discover gene programs on single-cell data☆99Updated 2 months ago
- ☆98Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 4 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 4 years ago
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆39Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆110Updated 5 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆43Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆90Updated 5 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆102Updated 2 years ago
- ☆105Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆96Updated last week
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Senescent Cell Identification☆30Updated 11 months ago
- Accurate and fast cell marker gene identification with COSG☆41Updated last year