zhengrongbin / MEBOCOSTView external linksLinks
A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
☆78Jul 25, 2025Updated 6 months ago
Alternatives and similar repositories for MEBOCOST
Users that are interested in MEBOCOST are comparing it to the libraries listed below
Sorting:
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆121Oct 31, 2025Updated 3 months ago
- ☆34Nov 26, 2025Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆153Jun 27, 2025Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆180Aug 12, 2025Updated 6 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- ☆129Apr 24, 2024Updated last year
- Metacell - Single-cell mRNA Analysis☆120Jan 26, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆179Mar 27, 2025Updated 10 months ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆117Jan 22, 2024Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆245Jan 16, 2026Updated last month
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Nov 24, 2025Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Nov 2, 2025Updated 3 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆19Dec 5, 2024Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated 11 months ago
- NicheNet: predict active ligand-target links between interacting cells☆615Nov 12, 2025Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆153Feb 15, 2022Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- R implementation of GeneTrajectory☆68Apr 5, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆414Sep 4, 2025Updated 5 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆66Nov 23, 2025Updated 2 months ago
- R package to do the Ligand Receptor Analysis Visualization☆49Nov 27, 2025Updated 2 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆231Aug 7, 2024Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆119Sep 27, 2024Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated 11 months ago
- A tool for detecting somatic variants in single cell data☆216Sep 15, 2024Updated last year
- ☆21Sep 20, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆398Dec 2, 2025Updated 2 months ago