cnio-bu / beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
☆48Updated 5 months ago
Alternatives and similar repositories for beyondcell:
Users that are interested in beyondcell are comparing it to the libraries listed below
- ☆61Updated 8 months ago
- A single-cell RNA-seq pipeline☆22Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆73Updated 6 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- scWGCNA☆56Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆70Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Methods for decontamination of single cell data☆38Updated 3 weeks ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆100Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated last week
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆41Updated 2 years ago
- ☆49Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- Unified access to several second-generation deconvolution methods☆65Updated 3 weeks ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆39Updated 3 years ago
- Gene group activity utility functions for Scanpy☆68Updated 2 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆66Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 4 months ago
- R package for the analysis of single-cell immune repertoires☆42Updated last month
- Method for de novo mutation calling from droplet based single cell RNA seq data☆13Updated 3 years ago