cnio-bu / beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
☆40Updated this week
Related projects: ⓘ
- A single-cell RNA-seq pipeline☆19Updated last year
- ☆38Updated 2 months ago
- R package for the analysis of single-cell immune repertoires☆39Updated 3 weeks ago
- R package for pathway analysis in scRNA-seq data☆57Updated last month
- Gene group activity utility functions for Scanpy☆49Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆15Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆64Updated 3 weeks ago
- scWGCNA☆53Updated last year
- Methods for decontamination of single cell data☆29Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆37Updated last year
- ☆39Updated 3 years ago
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆24Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆27Updated 3 years ago
- ☆16Updated last year
- ☆43Updated 9 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆44Updated last month
- ☆32Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 2 months ago
- ☆61Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆92Updated last year
- R implementation of GeneTrajectory☆44Updated 5 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆32Updated last month
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- SCDC☆42Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆27Updated 4 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 2 years ago