changwn / scFEALinks
single cell Flux Estimation Analysis (scFEA) Try the below web server!
☆124Updated last year
Alternatives and similar repositories for scFEA
Users that are interested in scFEA are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type harmonization and integration☆108Updated 4 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 6 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 5 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆112Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- Spatial transcriptomics of heart tissue☆89Updated last year
- ☆124Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆110Updated 10 months ago
- AUCell: score single cells with gene regulatory networks☆160Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆85Updated 5 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆138Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆165Updated 4 months ago
- trajectory inference☆104Updated 6 months ago
- ☆80Updated last week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆157Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆103Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- ☆122Updated 3 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆117Updated 10 months ago
- ☆110Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago
- Methods to discover gene programs on single-cell data☆140Updated 3 weeks ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆75Updated 6 months ago