changwn / scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
☆117Updated last year
Alternatives and similar repositories for scFEA:
Users that are interested in scFEA are comparing it to the libraries listed below
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆156Updated 8 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆125Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆106Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆121Updated 5 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆126Updated last month
- Detect doublets in single-cell RNA-seq data☆143Updated 4 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- reticulate-free single cell format conversion☆131Updated 3 months ago
- Scissor package☆210Updated 10 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆148Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆103Updated 5 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- ☆115Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- ☆71Updated last week
- SingleCellNet: classify single cells across species and platforms☆136Updated last year
- ☆127Updated last year
- R package to access DoRothEA's regulons☆142Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆209Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week