single cell Flux Estimation Analysis (scFEA)
☆156Nov 10, 2023Updated 2 years ago
Alternatives and similar repositories for scFEA
Users that are interested in scFEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 10 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆84Jul 25, 2025Updated last year
- ☆90Jun 29, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆195Aug 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 5 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- ☆65Mar 23, 2026Updated 5 months ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 7 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated 10 months ago
- ☆45Nov 26, 2025Updated 9 months ago
- Single-cell disease relevance score (scDRS)☆194Aug 27, 2026Updated last week
- R implementation of GeneTrajectory☆71May 9, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- Cell type prioritization in single-cell data☆149Mar 26, 2026Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- Methods to discover gene programs on single-cell data☆207Jul 21, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to access DoRothEA's regulons☆160Feb 24, 2024Updated 2 years ago
- ☆65Feb 21, 2026Updated 6 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Jun 17, 2026Updated 2 months ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆173May 6, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 7 months ago
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆672Mar 11, 2026Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Scissor package☆275May 10, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year