single cell Flux Estimation Analysis (scFEA)
☆156Nov 10, 2023Updated 2 years ago
Alternatives and similar repositories for scFEA
Users that are interested in scFEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 8 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- ☆90Jun 29, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆191Feb 18, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- An R library for conducting analyses on COMPASS data.☆17Jun 10, 2021Updated 5 years ago
- Assessing the purity of single cell population☆152Jun 3, 2022Updated 4 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- ☆63Mar 23, 2026Updated 4 months ago
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 6 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆75Oct 16, 2025Updated 9 months ago
- ☆44Nov 26, 2025Updated 7 months ago
- Single-cell disease relevance score (scDRS)☆192Jun 27, 2026Updated 3 weeks ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Cell type prioritization in single-cell data☆144Mar 26, 2026Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- Methods to discover gene programs on single-cell data☆197Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package to access DoRothEA's regulons☆159Feb 24, 2024Updated 2 years ago
- ☆65Feb 21, 2026Updated 5 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last month
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆201Jan 30, 2026Updated 5 months ago
- High dimensional weighted gene co-expression network analysis☆488Jun 16, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆664Mar 11, 2026Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆261Jul 8, 2026Updated 2 weeks ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Scissor package☆271May 10, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year