changwn / scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
☆102Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scFEA
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆121Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆148Updated 4 months ago
- Single-cell disease relevance score (scDRS)☆114Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆76Updated 5 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆138Updated this week
- Spatial transcriptomics of heart tissue☆72Updated last year
- R package to access DoRothEA's regulons☆133Updated 9 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated 2 weeks ago
- A Bayesian model for compositional single-cell data analysis☆150Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆101Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 7 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆97Updated last month
- ☆108Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated last week
- Clonotype Neighbor Graph Analysis☆82Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆57Updated 5 months ago
- Quantifying metabolism activity at the single-cell resolution☆114Updated 3 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆96Updated last month
- Scissor package☆189Updated 6 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago