IanevskiAleksandr / sc-typeLinks
☆266Updated 6 months ago
Alternatives and similar repositories for sc-type
Users that are interested in sc-type are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆425Updated last year
- ☆235Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆297Updated 4 years ago
- my notes for scATACseq analysis☆126Updated last year
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- Analysis of single cell RNA-seq data course☆136Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆331Updated 10 months ago
- A toolkit for single-cell immune profiling☆333Updated this week
- ☆169Updated 3 weeks ago
- Tutorial for scRNA-seq data analysis beginners using R☆200Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆258Updated last week
- Single cell RNA sequencing analysis course☆214Updated last month
- Interpretation of cell states using reference single-cell maps☆276Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆283Updated 2 years ago
- reticulate-free single cell format conversion☆154Updated 5 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- ☆355Updated 3 years ago
- Scissor package☆222Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆413Updated 3 weeks ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆287Updated 3 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆324Updated this week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆158Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago