IanevskiAleksandr / sc-type
☆257Updated 4 months ago
Alternatives and similar repositories for sc-type:
Users that are interested in sc-type are comparing it to the libraries listed below
- A package to help convert different single-cell data formats to each other☆413Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Analysis of single cell RNA-seq data course☆131Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆268Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆314Updated 8 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- A toolkit for single-cell immune profiling☆327Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆289Updated 4 years ago
- ☆226Updated 8 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆247Updated this week
- my notes for scATACseq analysis☆122Updated 10 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆181Updated 2 weeks ago
- Single cell RNA sequencing analysis course☆205Updated last week
- Cell types enrichment analysis☆194Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Scissor package☆210Updated 10 months ago
- Clone of the Bioconductor repository for the SingleR package.☆184Updated last month
- ☆353Updated 3 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆270Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆408Updated 2 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆209Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆314Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆521Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆245Updated 3 months ago
- tools and notes for spatial omics☆271Updated 3 weeks ago