Alternatives and similar repositories for scRank

Users that are interested in scRank are comparing it to the libraries listed below

• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆106Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• xiaoyeye / TFvelo
  ☆46Updated last year
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 4 years ago
• xleizi / easySCF
  ☆48Updated 2 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated this week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• ostunilab / PDAC_Nature_2023
  ☆21Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆72Updated 3 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆73Updated 11 months ago
• bio-Pixel / panVC
  ☆55Updated last year
• Masood-Lab / PDAC_Mets
  The current study provides a comprehensive insights into the PDAC metastatic biology.
  ☆23Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆53Updated last week
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• lanagarmire / Asgard
  ☆44Updated last year
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 10 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 5 months ago
• lmw123 / DISCOtoolkit
  ☆34Updated 2 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• ruipwang / GastricTME
  ☆15Updated 2 years ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆79Updated 8 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆29Updated 3 years ago
• Lan-lab / sc-GC
  ☆32Updated 3 years ago