A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
☆67Oct 16, 2025Updated 5 months ago
Alternatives and similar repositories for scRank
Users that are interested in scRank are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Updated this week
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22May 20, 2023Updated 2 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Construct Tumor Transition Zone Microenvironment☆57Jun 25, 2025Updated 9 months ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 4 months ago
- ☆23Jul 9, 2025Updated 9 months ago
- Hierarchical Cell Annotation☆28Nov 17, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated 2 weeks ago
- Quantifying metabolism activity at the single-cell resolution☆163Feb 18, 2026Updated last month
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆46May 4, 2024Updated last year
- ☆33Feb 26, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Methods to discover gene programs on single-cell data☆179Apr 1, 2026Updated last week
- ☆23Mar 12, 2026Updated 3 weeks ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆10May 16, 2023Updated 2 years ago
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆283Apr 2, 2026Updated last week
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- ☆58Jan 2, 2024Updated 2 years ago
- Cell type prioritization in single-cell data☆139Mar 26, 2026Updated 2 weeks ago
- Machine learning-based integration model with elegant performance☆190Sep 23, 2025Updated 6 months ago
- ☆11Jul 8, 2024Updated last year
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆148Jan 14, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆183May 6, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆30Oct 24, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆118Apr 26, 2025Updated 11 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆58Sep 17, 2024Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year