ZJUFanLab / scRankLinks
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
☆64Updated 3 months ago
Alternatives and similar repositories for scRank
Users that are interested in scRank are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆100Updated last year
- R code used to analyze single cell PDAC data☆41Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- ☆28Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- ☆21Updated last year
- ☆40Updated 2 years ago
- Codes for the scPLC project☆74Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- ☆48Updated 3 months ago
- R implementation of GeneTrajectory☆69Updated last year
- ☆30Updated last year
- Accurate and fast cell marker gene identification with COSG☆54Updated 2 weeks ago
- ☆46Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- ☆32Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- ☆62Updated 2 years ago
- ☆32Updated 3 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- ☆57Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago