ZJUFanLab / scRankLinks
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
☆60Updated 3 weeks ago
Alternatives and similar repositories for scRank
Users that are interested in scRank are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- ☆27Updated last year
- ☆40Updated 2 years ago
- R code used to analyze single cell PDAC data☆40Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Spatial transcriptomics of heart tissue☆99Updated 2 years ago
- ☆45Updated last year
- ☆21Updated last year
- ☆60Updated last year
- ☆46Updated 2 weeks ago
- Spatial Cellular Estimator for Tumors☆58Updated last month
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- R implementation of GeneTrajectory☆65Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- ☆32Updated 2 weeks ago
- Codes for the scPLC project☆69Updated 2 years ago
- ☆31Updated 3 years ago
- Integration of gut cell atlases☆29Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- ☆54Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆44Updated last year
- ☆28Updated last year
- ☆31Updated 3 years ago
- ☆48Updated 3 months ago
- ☆17Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- ☆14Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 6 months ago