A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
☆64Oct 16, 2025Updated 4 months ago
Alternatives and similar repositories for scRank
Users that are interested in scRank are comparing it to the libraries listed below
Sorting:
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Feb 20, 2026Updated last week
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- Construct Tumor Transition Zone Microenvironment☆55Jun 25, 2025Updated 8 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 3 months ago
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated last week
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 2 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- ☆23Jul 9, 2025Updated 7 months ago
- ☆47May 4, 2024Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆94Updated this week
- ☆23Feb 12, 2026Updated 2 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆276Jan 3, 2026Updated last month
- Methods to discover gene programs on single-cell data☆174Sep 26, 2025Updated 5 months ago
- A R package for advanced single cell data viz☆73Aug 29, 2025Updated 6 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated 11 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- ☆57Jan 2, 2024Updated 2 years ago
- Machine learning-based integration model with elegant performance☆183Sep 23, 2025Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- Cell type prioritization in single-cell data☆138Oct 23, 2024Updated last year
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆146Jan 14, 2026Updated last month
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 2 months ago
- ☆11Jul 8, 2024Updated last year
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- ☆23Jan 21, 2026Updated last month
- ☆182May 6, 2025Updated 9 months ago
- ☆32Feb 26, 2025Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆294Updated this week
- Multiome GRN inference.☆135Apr 19, 2024Updated last year