LIANA+: an all-in-one framework for cell-cell communication
☆299Jun 17, 2026Updated last week
Alternatives and similar repositories for liana-py
Users that are interested in liana-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to perform enrichment analysis from omics data.☆272Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆378Updated this week
- CellRank: dynamics from multi-view single-cell data☆453Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆180Jun 16, 2026Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆189Aug 12, 2025Updated 10 months ago
- Spatial Single Cell Analysis in Python☆578Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆475Jun 6, 2025Updated last year
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- Reference mapping for single-cell genomics☆406Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆84Feb 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆139Apr 24, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆198Jan 30, 2026Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 5 months ago
- Single-cell epigenomics analysis tools☆321Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆502Apr 23, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆443Jun 2, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆661Jun 1, 2026Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- ☆43Jan 12, 2026Updated 5 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆250Jun 16, 2026Updated last week
- An open and interoperable data framework for spatial omics data☆381Jun 22, 2026Updated last week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Updated this week
- muon is a multimodal omics Python framework☆271May 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆256Mar 14, 2026Updated 3 months ago
- Multiview Intercellular SpaTial modeling framework☆73Jan 15, 2026Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated last month
- This is the alpha version of the CellOracle package☆470Apr 30, 2026Updated last month
- Single-cell perturbation analysis☆330Updated this week
- RNA Velocity generalized through dynamical modeling☆505Feb 25, 2026Updated 4 months ago