PaulingLiu / ROGUE

Related projects ⓘ

Alternatives and complementary repositories for ROGUE

• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆112Updated 3 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆85Updated 3 years ago
• Coolgenome / iTALK
  ☆58Updated 5 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆72Updated 4 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆91Updated 11 months ago
• navinlabcode / CellTrek
  ☆108Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆100Updated 2 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆43Updated 2 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆84Updated this week
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆66Updated this week
• chloelulu / scMayoMap
  ☆17Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆112Updated 2 weeks ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆59Updated last year
• Sijin-ZhangLab / PanMyeloid
  ☆93Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆59Updated 4 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆36Updated 7 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆87Updated 11 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆96Updated 2 months ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆47Updated 7 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆115Updated 3 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆100Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆59Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 3 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆123Updated this week
• TheHumphreysLab / plot1cell
  ☆95Updated last year
• rpolicastro / scProportionTest
  ☆59Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆93Updated 5 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆96Updated last month