Genearlized mapping scripts for RNA-seq and Patch-seq data
☆19Sep 29, 2025Updated last year
Alternatives and similar repositories for scrattch.mapping
Users that are interested in scrattch.mapping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆23May 1, 2024Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- ☆11Jul 8, 2024Updated 2 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆123Aug 20, 2025Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆18Feb 23, 2026Updated 7 months ago
- ☆22Aug 4, 2024Updated 2 years ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆17Sep 24, 2024Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated last month
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆39Jan 24, 2025Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆15Nov 24, 2025Updated 10 months ago
- Code for fMRI and behavioral data analyses from DecideNet project on decision making in the context of reward and punishment.☆14Jun 30, 2022Updated 4 years ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆262Jun 28, 2026Updated 3 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Aug 17, 2023Updated 3 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆18May 18, 2023Updated 3 years ago
- Miscellaneous R script to wrangle data and generate visualizations☆18Aug 14, 2024Updated 2 years ago
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆23Jun 10, 2026Updated 4 months ago
- ☆23Sep 8, 2023Updated 3 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆40Aug 22, 2024Updated 2 years ago
- ☆35Apr 8, 2023Updated 3 years ago
- R package to analyze single cell DNA sequencing data.☆11Sep 24, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Easy single cell analysis platform for enrichment☆236Aug 9, 2026Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 7 months ago
- Repository for storing prototype functionality implementations for the BKP☆58Sep 25, 2026Updated 2 weeks ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- ☆35Jan 26, 2022Updated 4 years ago
- Human cortical cell types☆25Aug 21, 2019Updated 7 years ago