Alternatives and similar repositories for scrattch.mapping:

Users that are interested in scrattch.mapping are comparing it to the libraries listed below

• GfellerLab / MetacellAnalysisToolkit
  Toolkit for metacell analysis
  ☆14Updated 6 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆29Updated last month
• sulab-wmu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆37Updated last month
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆35Updated 6 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 3 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated last week
• xleizi / easySCF
  ☆37Updated 3 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• yunguan-wang / Spacia
  ☆27Updated 4 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆69Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆30Updated 4 months ago
• zktuong / ktplotspy
  Python library for plotting Cellphonedb results. Ported from ktplots R package.
  ☆48Updated this week
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆33Updated this week
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated this week
• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 4 years ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆47Updated 4 months ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆13Updated last year
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆15Updated last year
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆20Updated last month
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 3 years ago
• Teichlab / HCA_Heart_ver2
  ☆28Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• GreenleafLab / scScalpChromatin
  ☆24Updated last year
• Teichlab / sctk
  ☆35Updated 5 months ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆20Updated 2 years ago
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆13Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆59Updated 4 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 4 months ago