Alternatives and similar repositories for scrattch.mapping

Users that are interested in scrattch.mapping are comparing it to the libraries listed below

• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆36Updated 5 months ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆37Updated last year
• zktuong / ktplotspy
  Python library for plotting Cellphonedb results. Ported from ktplots R package.
  ☆57Updated last week
• sulab-wmu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆66Updated 2 months ago
• yunguan-wang / Spacia
  ☆30Updated 9 months ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆38Updated 4 months ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆18Updated 4 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆22Updated 5 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• GfellerLab / MetacellAnalysisToolkit
  Toolkit for metacell analysis
  ☆23Updated last year
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆54Updated last year
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆47Updated last year
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆19Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆16Updated 2 years ago
• Wei-BioMath / NeuronChat
  ☆44Updated 2 years ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 8 months ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆39Updated last year
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆20Updated last year
• Coolgenome / PDAC
  ☆25Updated 11 months ago
• devsystemslab / snapseed
  ☆26Updated 10 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆84Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆31Updated 3 years ago
• xleizi / easySCF
  ☆48Updated 3 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• ati-lz / ISCHIA
  Framework for analysis of cell-types and Ligand-Receptor cooccurrences
  ☆18Updated 2 years ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆35Updated 4 years ago