Genearlized mapping scripts for RNA-seq and Patch-seq data
☆19Sep 29, 2025Updated 9 months ago
Alternatives and similar repositories for scrattch.mapping
Users that are interested in scrattch.mapping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 9 months ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆22May 1, 2024Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Toolkit for metacell analysis☆24Aug 8, 2024Updated last year
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Jul 8, 2024Updated last year
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 10 months ago
- ☆22Aug 4, 2024Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Client to access ExperimentHub resources☆11Jun 15, 2026Updated 2 weeks ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆13Nov 24, 2025Updated 7 months ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated 11 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆256Updated this week
- AUCell: score single cells with gene regulatory networks☆196Mar 9, 2024Updated 2 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆17May 18, 2023Updated 3 years ago
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆22Jun 10, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for fMRI and behavioral data analyses from DecideNet project on decision making in the context of reward and punishment.☆14Jun 30, 2022Updated 4 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- Miscellaneous R script to wrangle data and generate visualizations☆17Aug 14, 2024Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆21Jun 10, 2026Updated 3 weeks ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 10 months ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆35Apr 9, 2026Updated 2 months ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- ☆35Apr 8, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Easy single cell analysis platform for enrichment☆227Apr 3, 2026Updated 2 months ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆307Updated this week
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 10 months ago
- ☆47Jan 28, 2026Updated 5 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆37Jan 13, 2026Updated 5 months ago
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 5 months ago
- ☆26Feb 20, 2025Updated last year