AllenInstitute / scrattch.mappingLinks
Genearlized mapping scripts for RNA-seq and Patch-seq data
☆17Updated 2 months ago
Alternatives and similar repositories for scrattch.mapping
Users that are interested in scrattch.mapping are comparing it to the libraries listed below
Sorting:
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆56Updated last week
- Toolkit for metacell analysis☆23Updated last year
- ☆30Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆54Updated 3 weeks ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Updated 4 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆20Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- ☆41Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Updated 2 years ago
- ☆28Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- Parse ArchR arrow files to anndata h5ad☆15Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- ☆30Updated 7 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- CellRank's reproducibility repository.☆16Updated 3 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- ☆48Updated 7 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- ☆36Updated last month
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆39Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- ☆48Updated last month