Genearlized mapping scripts for RNA-seq and Patch-seq data
☆18Sep 29, 2025Updated 6 months ago
Alternatives and similar repositories for scrattch.mapping
Users that are interested in scrattch.mapping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iterative clustering pipeline of big single cell datasets.☆38Sep 5, 2025Updated 7 months ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated last year
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 11 months ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆11Jul 8, 2024Updated last year
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 7 months ago
- ☆21Aug 4, 2024Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated 9 months ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 5 months ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 5 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆13Nov 24, 2025Updated 4 months ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated 8 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆248Apr 1, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆17Updated this week
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆16May 18, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆21Mar 4, 2026Updated last month
- Code for fMRI and behavioral data analyses from DecideNet project on decision making in the context of reward and punishment.☆14Jun 30, 2022Updated 3 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Miscellaneous R script to wrangle data and generate visualizations☆17Aug 14, 2024Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 7 months ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆33Updated this week
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 6 years ago
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆298Updated this week
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 7 months ago
- ☆47Jan 28, 2026Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆148Jan 14, 2026Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 2 months ago
- ☆25Feb 20, 2025Updated last year
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 5 years ago