smorabit / hdWGCNA

Related projects ⓘ

Alternatives and complementary repositories for hdWGCNA

• IanevskiAleksandr / sc-type
  ☆237Updated 7 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆217Updated last year
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆342Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆176Updated last week
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆303Updated 3 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆214Updated this week
• ncborcherding / scRepertoire
  A toolkit for single-cell immune profiling
  ☆307Updated this week
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆277Updated last year
• navinlabcode / copykat
  ☆207Updated 4 months ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆210Updated 8 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆287Updated last month
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆387Updated 2 weeks ago
• cole-trapnell-lab / monocle3
  ☆338Updated 2 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆484Updated 2 months ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆239Updated 11 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆273Updated 4 years ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆389Updated last week
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆389Updated 5 months ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆413Updated 5 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆250Updated last month
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆307Updated this week
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆382Updated 8 months ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆306Updated last year
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆242Updated last month
• Teichlab / cellphonedb
  ☆342Updated 2 years ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆166Updated 5 months ago
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆153Updated 3 weeks ago
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆216Updated 2 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆259Updated 2 years ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆295Updated 3 months ago