smorabit / hdWGCNALinks
High dimensional weighted gene co-expression network analysis
☆420Updated last week
Alternatives and similar repositories for hdWGCNA
Users that are interested in hdWGCNA are comparing it to the libraries listed below
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆386Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆265Updated this week
- Community-provided extensions to Seurat☆340Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆286Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- ☆391Updated 2 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- ☆242Updated last year
- ☆269Updated 8 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆482Updated 3 months ago
- A toolkit for single-cell immune profiling☆341Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆525Updated last year
- A package to help convert different single-cell data formats to each other☆433Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- NicheNet: predict active ligand-target links between interacting cells☆551Updated 2 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆229Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆379Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆298Updated last year
- ☆357Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆191Updated this week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆460Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆225Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- Interpretation of cell states using reference single-cell maps☆282Updated last month
- Dataset distribution for Seurat☆142Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated last year
- Useful functions to make your scRNA-seq plot more cool!☆344Updated 2 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆498Updated last week
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆249Updated 2 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆206Updated 4 months ago