High dimensional weighted gene co-expression network analysis
☆472Mar 13, 2026Updated last month
Alternatives and similar repositories for hdWGCNA
Users that are interested in hdWGCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Apr 27, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆297Updated this week
- Methods for detecting doublets in single-cell sequencing data☆246Feb 12, 2026Updated 2 months ago
- R package to infer biological activities from omics data using a collection of methods.☆293Dec 16, 2025Updated 4 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Conversion between scRNA-seq objects☆207Apr 16, 2026Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆781Jan 6, 2024Updated 2 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 3 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- Scissor package☆262May 10, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- A toolkit for single-cell immune profiling☆369Apr 24, 2026Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆590Mar 4, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆482Apr 5, 2024Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆220Mar 2, 2026Updated 2 months ago
- Gene set scoring for single-cell data☆192Feb 11, 2026Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆430Apr 11, 2026Updated 3 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated 2 weeks ago
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 6 months ago
- R toolkit for the analysis of single-cell chromatin data☆414Apr 20, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆227Apr 28, 2026Updated last week
- ☆294Nov 10, 2024Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 4 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆177Jan 8, 2026Updated 3 months ago