Alternatives and similar repositories for RNA_MUTECt_WMN

Users that are interested in RNA_MUTECt_WMN are comparing it to the libraries listed below

• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 7 months ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• dbrg77 / ISSAAC-seq
  ☆18Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• gerstung-lab / PCAWG-11
  Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)
  ☆17Updated 5 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated 2 months ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 4 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated last year
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• wwylab / DeMixT
  ☆36Updated last month
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• olapuentesantana / easier_manuscript
  ☆15Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆15Updated 5 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• dzhakparov / GeneSelectR
  ☆23Updated last year
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 4 months ago