wu-yc / scMetabolismLinks
Quantifying metabolism activity at the single-cell resolution
☆149Updated 6 months ago
Alternatives and similar repositories for scMetabolism
Users that are interested in scMetabolism are comparing it to the libraries listed below
Sorting:
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆178Updated 4 months ago
- Methods to discover gene programs on single-cell data☆167Updated 3 months ago
- Assessing the purity of single cell population☆139Updated 3 years ago
- ☆111Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆88Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆208Updated this week
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆122Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 8 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆151Updated 3 years ago
- ☆41Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆130Updated last year
- Gene set scoring for single-cell data☆175Updated 2 months ago
- Codes used in pan-T cell analysis☆64Updated 2 years ago
- reticulate-free single cell format conversion☆201Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- Cell type prioritization in single-cell data☆132Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆126Updated 3 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆98Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆235Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- Scissor package☆245Updated last year
- ☆180Updated 7 months ago