Multiome GRN inference.
☆141Apr 10, 2026Updated 4 months ago
Alternatives and similar repositories for Pando
Users that are interested in Pando are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated last year
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Updated this week
- This is the alpha version of the CellOracle package☆487Apr 30, 2026Updated 4 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆345Apr 23, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆130Aug 3, 2026Updated 3 weeks ago
- R package IReNA☆31Nov 13, 2024Updated last year
- ☆47Jun 27, 2023Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- ☆120Apr 24, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆135Jul 11, 2026Updated last month
- Gene set scoring for single-cell data☆206Apr 29, 2026Updated 4 months ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- ☆16Apr 8, 2026Updated 4 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆212Oct 20, 2025Updated 10 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- ☆29Apr 1, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆35Aug 15, 2026Updated 2 weeks ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆40Aug 22, 2024Updated 2 years ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆115Updated this week
- ☆28Dec 25, 2023Updated 2 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 6 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆183Jan 8, 2026Updated 7 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆148Apr 5, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated 2 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 2 months ago
- ☆10Sep 20, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago