Multiome GRN inference.
☆135Apr 19, 2024Updated last year
Alternatives and similar repositories for Pando
Users that are interested in Pando are comparing it to the libraries listed below
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Mar 1, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 2 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆420Sep 4, 2025Updated 5 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Sep 20, 2024Updated last year
- This is the alpha version of the CellOracle package☆421Feb 3, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆179Mar 27, 2025Updated 11 months ago
- Functional Inference of Gene Regulation☆51Jul 5, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Nov 24, 2025Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- R package IReNA☆29Nov 13, 2024Updated last year
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- ☆126Jan 31, 2026Updated last month
- ☆115Apr 24, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Gene set scoring for single-cell data☆183Feb 11, 2026Updated 2 weeks ago
- Single-cell Case Control Analysis☆53Updated this week
- Spatial Transcriptomics Capture Location Deconvolution☆201Oct 20, 2025Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- ☆45Jun 27, 2023Updated 2 years ago
- ☆285Nov 10, 2024Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆489Feb 20, 2026Updated last week
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆144Apr 5, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆764Jan 6, 2024Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆120Sep 27, 2024Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆217Updated this week
- R package to infer biological activities from omics data using a collection of methods.☆285Dec 16, 2025Updated 2 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month