quadbio / PandoLinks
Multiome GRN inference.
☆131Updated last year
Alternatives and similar repositories for Pando
Users that are interested in Pando are comparing it to the libraries listed below
Sorting:
- A Bayesian model for compositional single-cell data analysis☆184Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆122Updated last year
- Cell type prioritization in single-cell data☆131Updated last year
- AUCell: score single cells with gene regulatory networks☆179Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆174Updated 8 months ago
- Conversion between scRNA-seq objects☆194Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆175Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆226Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆212Updated 4 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- R package for semi-supervised single-cell data integration☆91Updated last week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated last month
- Gene set scoring for single-cell data☆174Updated last month
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- Single-cell disease relevance score (scDRS)☆170Updated 3 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- reticulate-free single cell format conversion☆199Updated last month
- Methods to discover gene programs on single-cell data☆166Updated 3 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Methods for detecting doublets in single-cell sequencing data☆222Updated last week
- Metacell - Single-cell mRNA Analysis☆117Updated 11 months ago
- ☆126Updated 3 years ago
- BANKSY: spatial clustering☆130Updated 2 months ago
- Fast Wilcoxon and auROC☆200Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆82Updated 9 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago