Multiome GRN inference.
☆144Apr 10, 2026Updated 6 months ago
Alternatives and similar repositories for Pando
Users that are interested in Pando are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 3 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆134Aug 3, 2026Updated 2 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- ☆48Jun 27, 2023Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- ☆120Apr 24, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆141Jul 11, 2026Updated 2 months ago
- Gene set scoring for single-cell data☆212Sep 8, 2026Updated last month
- Multi-omic velocity inference☆121Oct 23, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- ☆16Apr 8, 2026Updated 6 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆214Oct 20, 2025Updated 11 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Updated this week
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- ☆29Apr 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆38Aug 15, 2026Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆40Aug 22, 2024Updated 2 years ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆127Aug 24, 2026Updated last month
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 4 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆189Jan 8, 2026Updated 9 months ago
- ☆11Sep 20, 2022Updated 4 years ago
- CellRank: dynamics from multi-view single-cell data☆457Updated this week
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago