SCassist : An AI Based Workflow Assistant for Single-Cell Analysis
☆31Aug 22, 2025Updated 7 months ago
Alternatives and similar repositories for SCassist
Users that are interested in SCassist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last month
- A framework for network analysis and display of SNPs☆20Oct 31, 2016Updated 9 years ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 6 months ago
- ☆10May 31, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hierarchical Cell Annotation☆28Nov 17, 2024Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆76Jan 17, 2025Updated last year
- ☆26Oct 25, 2023Updated 2 years ago
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 4 months ago
- ☆34Apr 11, 2025Updated last year
- ☆14Feb 21, 2023Updated 3 years ago
- ☆24Jun 25, 2025Updated 9 months ago
- ☆16Oct 18, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for decontamination of single cell data☆62Feb 16, 2025Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆36Mar 18, 2026Updated last month
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- ☆59Jan 2, 2024Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 5 months ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆34Sep 3, 2025Updated 7 months ago
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆31Mar 15, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆13Jun 15, 2024Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆220Mar 2, 2026Updated last month
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆99Feb 23, 2026Updated last month
- ☆17Oct 4, 2025Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- ☆12Mar 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆585Mar 4, 2026Updated last month
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 2 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆238Mar 17, 2026Updated last month
- ☆17Jan 12, 2026Updated 3 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆140Mar 13, 2026Updated last month