NIH-NEI / SCassistLinks
SCassist : An AI Based Workflow Assistant for Single-Cell Analysis
☆26Updated last week
Alternatives and similar repositories for SCassist
Users that are interested in SCassist are comparing it to the libraries listed below
Sorting:
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Hierarchical Cell Annotation☆25Updated 9 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆20Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- Pan-Cancer Single Cell Classifier☆77Updated last year
- ☆50Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- ☆58Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆37Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- ☆22Updated 2 years ago
- A R package for advanced single cell data viz☆68Updated this week
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 months ago
- Pseudotime Analysis for Bulk Data☆16Updated last year
- ☆56Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago