SCassist : An AI Based Workflow Assistant for Single-Cell Analysis
☆33Aug 22, 2025Updated last year
Alternatives and similar repositories for SCassist
Users that are interested in SCassist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆34Mar 15, 2025Updated last year
- The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification☆15Oct 10, 2026Updated last week
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- A quick, free tool for single-cell annotation using large language models☆13Nov 27, 2025Updated 10 months ago
- ☆27Oct 25, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- ☆17Oct 18, 2023Updated 3 years ago
- Hierarchical Cell Annotation☆33Nov 17, 2024Updated last year
- Methods for decontamination of single cell data☆69Oct 9, 2026Updated 2 weeks ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- A package for reference mapping and nice visualization☆25Dec 16, 2025Updated 10 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆269Jul 8, 2026Updated 3 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/P…☆20Updated this week
- ☆117Sep 7, 2026Updated last month
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.☆10Apr 17, 2024Updated 2 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 10 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- Cell type-specific SVG detection☆10Jan 28, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Oct 12, 2026Updated last week
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆36Jul 23, 2026Updated 3 months ago
- ☆39Apr 20, 2026Updated 6 months ago
- ☆10May 31, 2022Updated 4 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 7 months ago
- ☆14Feb 21, 2023Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆146Mar 13, 2026Updated 7 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆333Sep 19, 2026Updated last month
- Agent Skill for academic journal recommendation, journal selection, manuscript submission, CAS/JCR ranking, Aims & Scope matching, and …☆65May 27, 2026Updated 4 months ago
- The single T cell annotation tool for scRNA-seq data☆30Apr 25, 2025Updated last year
- ☆10Jul 6, 2024Updated 2 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆41Updated this week
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated 2 years ago
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago