Alternatives and similar repositories for SCassist

Users that are interested in SCassist are comparing it to the libraries listed below

• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆31Updated last month
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last month
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated 2 years ago
• xiebb123456 / AutomaticCellTypeIdentification
  ☆19Updated 3 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆37Updated 7 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆83Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆45Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆91Updated 3 weeks ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated last month
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 4 months ago
• cnio-bu / bollito
  A single-cell RNA-seq pipeline
  ☆26Updated 2 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆40Updated 2 weeks ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• cboix / admultiregion_analysis
  Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
  ☆41Updated last year
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆56Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆61Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆58Updated 3 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago