Alternatives and similar repositories for transanno:

Users that are interested in transanno are comparing it to the libraries listed below

• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 7 months ago
• epi2me-labs / wf-basecalling
  ☆35Updated 2 weeks ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆140Updated 5 months ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆111Updated 8 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆96Updated this week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 7 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 10 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆135Updated 3 weeks ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last week
• wdecoster / chopper
  ☆169Updated this week
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆93Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated last week
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆115Updated 4 years ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 4 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆106Updated 2 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆121Updated this week
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆101Updated this week
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated 3 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆98Updated this week
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆72Updated 3 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• xiaochuanle / MECAT2
  ☆70Updated 4 years ago