Alternatives and similar repositories for transanno

Users that are interested in transanno are comparing it to the libraries listed below

• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆127Updated 3 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆126Updated 10 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆159Updated 7 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆119Updated 3 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 5 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated 3 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆196Updated 2 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆149Updated 3 weeks ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆123Updated last year
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆134Updated last week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆147Updated last week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆122Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆118Updated 11 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated 3 weeks ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 5 months ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• twolinin / longphase
  ☆119Updated last week
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆172Updated last month
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 3 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆139Updated 3 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated last month