Alternatives and similar repositories for transanno:

Users that are interested in transanno are comparing it to the libraries listed below

• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆146Updated 2 weeks ago
• marbl / ModDotPlot
  ☆142Updated 2 weeks ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated this week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆109Updated 4 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆145Updated last week
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆96Updated 2 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 9 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated 2 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆101Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆179Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆110Updated this week
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 4 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆116Updated 4 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• epi2me-labs / wf-basecalling
  ☆38Updated 3 weeks ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆142Updated last month
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆94Updated 2 months ago
• chenlianfu / geta
  ☆78Updated 9 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆64Updated 2 weeks ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 10 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆203Updated last month