informationsea / transannoLinks
accurate LiftOver tool for new genome assemblies
☆132Updated 11 months ago
Alternatives and similar repositories for transanno
Users that are interested in transanno are comparing it to the libraries listed below
Sorting:
- Dfam Transposable Element Tools Docker container.☆95Updated 2 weeks ago
- Same species annotation lift over pipeline.☆98Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆152Updated 3 months ago
- Pangenome-based genome inference☆130Updated 3 weeks ago
- Python programs for processing GFF3 files☆98Updated last year
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Research release basecalling models and configurations☆113Updated last month
- source code for EVM☆112Updated 7 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- Phased assembly variant caller☆121Updated 7 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Collection of tools for the analysis of CpG data☆86Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- Structural Variant Identification Method using Long Reads☆172Updated 4 years ago
- A complete diploid human genome☆121Updated 6 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last week
- SV caller for nanopore data☆91Updated 5 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- A tool for somatic structural variant calling using long reads☆138Updated last week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- ☆71Updated 5 years ago
- ☆113Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆119Updated 2 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆36Updated 4 years ago
- ☆151Updated 2 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 5 months ago