The tool is employed for the visualisation of genome-wide contact heatmaps.
☆14Apr 14, 2025Updated last year
Alternatives and similar repositories for PlotHiC
Users that are interested in PlotHiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Oct 8, 2026Updated 3 weeks ago
- ☆12Jun 7, 2024Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆49Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆16Apr 3, 2023Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- ☆30Oct 20, 2023Updated 3 years ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆20Sep 21, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Updated this week
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated 2 years ago
- Pipleline for deep centromeres analysis with CENdetectHOR☆11Aug 24, 2026Updated 2 months ago
- base-level dotplots from PAF alignments☆36Oct 25, 2026Updated 2 weeks ago
- ☆11Feb 12, 2022Updated 4 years ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆31Jul 29, 2025Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated last year
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- ☆10Nov 20, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- Garfield: Genetic Association by Random Forest and InterpretivE Logic Decisions.☆11Jun 30, 2025Updated last year
- ☆26Oct 22, 2026Updated 2 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆116Jul 23, 2026Updated 3 months ago
- ☆11Jun 2, 2025Updated last year