Pan-3D genome analysis of soybean Hi-C data
☆12Mar 6, 2023Updated 3 years ago
Alternatives and similar repositories for soybean_pan-3D_genome_analysis
Users that are interested in soybean_pan-3D_genome_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 7 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 7 months ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- ☆14Jan 20, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- personal genome constructor☆11May 29, 2025Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- ☆10Jun 13, 2020Updated 6 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆18Aug 12, 2022Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆27Sep 15, 2025Updated 11 months ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated 11 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆14May 16, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 3 weeks ago
- ☆32Nov 25, 2019Updated 6 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Structure variants calling and genotyping scripts for pan-Zea☆23Nov 17, 2022Updated 3 years ago
- ☆15May 3, 2023Updated 3 years ago
- ☆11Mar 14, 2026Updated 5 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago
- Study of TE evolution in a population of genomes☆11Dec 11, 2023Updated 2 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- ☆12Sep 1, 2022Updated 4 years ago
- ☆12Sep 28, 2021Updated 4 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago