Pan-3D genome analysis of soybean Hi-C data
☆12Mar 6, 2023Updated 3 years ago
Alternatives and similar repositories for soybean_pan-3D_genome_analysis
Users that are interested in soybean_pan-3D_genome_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 9 months ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 9 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆23Nov 17, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- ☆14Jan 20, 2026Updated 9 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 20, 2026Updated 2 weeks ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Snakemake workflow for the vg toolkit.☆12Mar 19, 2026Updated 7 months ago
- personal genome constructor☆11May 29, 2025Updated last year
- RNA smFISH oligos/probes design tool☆14Oct 14, 2026Updated 3 weeks ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- accurate LiftOver tool for new genome assemblies☆155Aug 8, 2024Updated 2 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆19Aug 12, 2022Updated 4 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆27Sep 15, 2025Updated last year
- ☆13Jan 18, 2023Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Paint chromosomes with BUSCOs☆10Sep 25, 2026Updated last month
- TADsplimer☆10Jun 24, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 2 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- Arima Capture HiC pipeline (Arima-CHiC)☆14May 16, 2024Updated 2 years ago
- Pan-genome analysis of Chinese (PGC)☆10Jan 9, 2024Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago