Alternatives and similar repositories for MAPS:

Users that are interested in MAPS are comparing it to the libraries listed below

• wenweixiong / MARVEL
  ☆46Updated 7 months ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• kundajelab / ataqc
  ☆16Updated 6 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• 10XGenomics / cellranger-atac
  ☆18Updated 4 years ago
• Henikoff / scCUT-Tag
  ☆15Updated last year
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆37Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆40Updated 11 months ago
• guifengwei / ChromHMM_mESC_mm10
  Chromatin States Map in mouse embryonic stem cell
  ☆15Updated 6 years ago
• deWitLab / peakC
  Peak calling for 4C data
  ☆12Updated 6 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆16Updated this week
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• JunyueC / sci-fate_analysis
  Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
  ☆24Updated 5 years ago
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• songlab-cal / scquint
  ☆16Updated 9 months ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆21Updated 4 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆50Updated last year
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆27Updated 3 years ago
• BMILAB / scAPAtrap
  ☆17Updated last year
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆34Updated 4 months ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated 9 months ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆14Updated 3 years ago
• dphansti / mango
  chia pet analysis software
  ☆25Updated 6 years ago