ijuric / MAPSLinks
☆19Updated 2 years ago
Alternatives and similar repositories for MAPS
Users that are interested in MAPS are comparing it to the libraries listed below
Sorting:
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆17Updated 6 years ago
- ☆17Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ☆49Updated 10 months ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- ☆17Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆34Updated last year
- ☆32Updated 5 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- ☆27Updated 3 years ago
- ☆19Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year