ajank / balancer-paper
Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melanogaster
☆10Updated 5 years ago
Alternatives and similar repositories for balancer-paper:
Users that are interested in balancer-paper are comparing it to the libraries listed below
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 10 months ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 3 months ago
- ☆11Updated 4 years ago
- ☆20Updated 6 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 3 years ago
- ☆12Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆8Updated 2 years ago
- Whole genome workflows☆12Updated 5 months ago
- ☆17Updated 8 months ago
- ☆23Updated 3 years ago
- ☆9Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- Quantify the Concurrence of DNA Methylation and De-methylation☆8Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆17Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 6 years ago
- End-guided RNA assembler☆15Updated last week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last month
- Scripts used for the ACT paper☆12Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 3 weeks ago
- ☆21Updated last month
- ☆11Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month