ajank / balancer-paper
Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melanogaster
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for balancer-paper
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 5 months ago
- R Package for phasing of single cell Strand-seq data☆10Updated 7 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- ☆11Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- ☆11Updated 3 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated 2 weeks ago
- RNA-seq analysis scripts☆15Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- ☆23Updated 3 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- ☆15Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆17Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- ☆19Updated last year
- ☆18Updated 4 months ago
- ☆23Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated 3 weeks ago
- Enabling differential allele-specific analysis☆11Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated 3 weeks ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago