ajank / balancer-paperLinks
Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melanogaster
☆10Updated 6 years ago
Alternatives and similar repositories for balancer-paper
Users that are interested in balancer-paper are comparing it to the libraries listed below
Sorting:
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated last year
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- Whole genome workflows☆12Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆11Updated 7 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10Updated 9 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- End-guided RNA assembler☆15Updated 2 months ago
- ☆11Updated 2 years ago
- ☆22Updated 2 years ago
- ☆14Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆20Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆12Updated 4 years ago
- ☆23Updated 4 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- ☆27Updated 3 years ago
- ☆11Updated 4 months ago
- Package to design primers for MutaSeq and related methods☆11Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week