weng-lab / BENGILinks
☆18Updated 3 years ago
Alternatives and similar repositories for BENGI
Users that are interested in BENGI are comparing it to the libraries listed below
Sorting:
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last month
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆12Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- single-cell Nucleosome Methylation Transcription☆14Updated 7 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆34Updated 6 years ago
- Fast motif matching in R☆46Updated last year
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- ☆36Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 6 months ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆38Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆12Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 7 months ago
- ☆26Updated 7 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last month