weng-lab / BENGILinks
☆18Updated 2 years ago
Alternatives and similar repositories for BENGI
Users that are interested in BENGI are comparing it to the libraries listed below
Sorting:
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 11 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆11Updated 4 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆35Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 months ago
- ☆49Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆34Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆26Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆18Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆20Updated 6 years ago