weng-lab / BENGILinks
☆19Updated 2 years ago
Alternatives and similar repositories for BENGI
Users that are interested in BENGI are comparing it to the libraries listed below
Sorting:
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 9 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- ☆11Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Paired-seq☆14Updated 11 months ago
- ☆26Updated 3 months ago
- ☆34Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆49Updated 11 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 3 months ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆20Updated 6 years ago
- ☆34Updated 2 years ago
- ☆30Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago