aryeelab / hichipperLinks
A preprocessing and QC pipeline for HiChIP data
☆40Updated 3 years ago
Alternatives and similar repositories for hichipper
Users that are interested in hichipper are comparing it to the libraries listed below
Sorting:
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 5 months ago
- ☆17Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Tutorial Website☆60Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆72Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Genomic Association Tester☆35Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆39Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- ☆41Updated 3 years ago
- ☆13Updated 8 years ago