ay-lab / selfish
SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for selfish
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 9 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆58Updated last year
- Red-C data processing☆13Updated last year
- Genome-wide contact analysis using sklearn☆59Updated 7 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆27Updated 7 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆12Updated this week
- Cooler demo using a Jupyter notebook Binder☆15Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆65Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- ☆17Updated 7 months ago
- ☆22Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆23Updated this week