SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
☆17Jun 1, 2023Updated 3 years ago
Alternatives and similar repositories for selfish
Users that are interested in selfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆43Jan 31, 2024Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆83Jan 24, 2025Updated last year
- Genome-wide contact analysis using sklearn☆76Mar 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 10 months ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Jul 7, 2026Updated 2 weeks ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆20Dec 18, 2022Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- A toolkit for analyzing architectural stripes☆22Dec 1, 2024Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Jul 13, 2026Updated last week
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆95Aug 29, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)