dejunlin / hicrepLinks
Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
☆38Updated last year
Alternatives and similar repositories for hicrep
Users that are interested in hicrep are comparing it to the libraries listed below
Sorting:
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 4 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 4 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆74Updated last month
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated 2 weeks ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆69Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 7 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 9 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 4 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆24Updated 4 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- ☆22Updated 2 years ago