ay-lab / ATACProcLinks
ATAC-seq processing pipeline
☆34Updated 3 years ago
Alternatives and similar repositories for ATACProc
Users that are interested in ATACProc are comparing it to the libraries listed below
Sorting:
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Tutorial Website☆61Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆54Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆17Updated 6 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- ☆28Updated 4 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- RNA editing tests☆17Updated 5 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- ☆51Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Chromatin States Map in mouse embryonic stem cell☆17Updated 7 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆24Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week