Alternatives and similar repositories for Paired-seq

Users that are interested in Paired-seq are comparing it to the libraries listed below

• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆20Updated 5 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆16Updated 3 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆13Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆19Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆13Updated 4 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated 2 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 4 years ago
• epigen / scifiRNA-seq
  ☆12Updated 5 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 5 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆15Updated 7 years ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆26Updated 6 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 6 months ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆20Updated 2 years ago
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆16Updated 5 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 5 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆17Updated last year
• mingjingsi / FIRM
  Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets
  ☆13Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 3 years ago
• WRui / Post_Implantation
  ☆30Updated 4 years ago
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated 2 years ago
• weng-lab / BENGI
  ☆18Updated 3 years ago