sims-lab / CapCruncherLinks
Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
☆9Updated 3 weeks ago
Alternatives and similar repositories for CapCruncher
Users that are interested in CapCruncher are comparing it to the libraries listed below
Sorting:
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- End-guided RNA assembler☆15Updated 2 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- isoCirc☆10Updated last year
- ☆17Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- ☆13Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 3 months ago
- ☆28Updated 6 months ago
- A collection of perl scripts for NGS analysis☆16Updated 8 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Analyse RNA feature distributions.☆16Updated 6 months ago
- ☆10Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- A program for the analysis of single cell nanopore long read data☆19Updated last week
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- ☆12Updated 4 years ago
- ☆16Updated last year
- ☆39Updated 9 months ago