deWitLab / GENOVALinks
GENome Organisation Visual Analytics
☆15Updated 4 years ago
Alternatives and similar repositories for GENOVA
Users that are interested in GENOVA are comparing it to the libraries listed below
Sorting:
- ☆17Updated 7 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- ☆15Updated 3 years ago
- ☆23Updated 4 years ago
- QC report generator for Hi-C pairs file☆13Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Peak calling for 4C data☆13Updated 7 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- ☆27Updated 3 years ago
- ☆23Updated 11 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆34Updated 2 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 5 years ago
- ☆20Updated this week
- Scripts used for the ACT paper☆12Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆24Updated last year
- Script used to identify de novo variants from sequencing data.☆11Updated 8 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆17Updated last year
- ☆13Updated 3 years ago