GENome Organisation Visual Analytics
☆16Dec 24, 2021Updated 4 years ago
Alternatives and similar repositories for GENOVA
Users that are interested in GENOVA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 8 months ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆26Jun 30, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆17Mar 5, 2026Updated 5 months ago
- Genome-wide contact analysis using sklearn☆78Mar 23, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- ☆20Jun 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated last month
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Jul 7, 2026Updated last month
- A cross-platform method for chromatin contact normalization☆16Dec 29, 2025Updated 8 months ago
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 5 months ago
- ☆25May 14, 2021Updated 5 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆34May 31, 2022Updated 4 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Algorithm to identify chromatin fountains☆22Apr 25, 2024Updated 2 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- ☆11Aug 3, 2018Updated 8 years ago
- ☆16Jun 11, 2017Updated 9 years ago
- GENome Organisation Visual Analytics☆92Feb 3, 2026Updated 6 months ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Aug 15, 2024Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆11Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆20Apr 24, 2025Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- ☆22Aug 11, 2020Updated 6 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 2 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 5 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated last month
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated 2 years ago