deWitLab / GENOVALinks
GENome Organisation Visual Analytics
☆16Updated 3 years ago
Alternatives and similar repositories for GENOVA
Users that are interested in GENOVA are comparing it to the libraries listed below
Sorting:
- Peak calling for 4C data☆12Updated 7 years ago
- ☆17Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- ☆15Updated 2 years ago
- ☆21Updated 5 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆23Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A toolkit for analyzing architectural stripes☆20Updated 8 months ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Code for finding putative enhancers using Hi-C data☆27Updated 7 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆19Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆26Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Updated 2 years ago
- ☆17Updated last year
- ☆30Updated 7 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆19Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆10Updated 2 months ago