nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
☆28Jul 5, 2024Updated last year
Alternatives and similar repositories for SNIPER
Users that are interested in SNIPER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Oct 29, 2025Updated 6 months ago
- The tools for your .cool's☆164Mar 19, 2026Updated last month
- ☆12Nov 9, 2020Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 2 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- Paired Genomic Loci Tool Suite☆35Nov 23, 2022Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20Jun 8, 2023Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆94Aug 29, 2022Updated 3 years ago
- ☆51Mar 17, 2023Updated 3 years ago
- ☆73Nov 21, 2025Updated 5 months ago
- GENome Organisation Visual Analytics☆90Feb 3, 2026Updated 2 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Dec 16, 2022Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆209May 19, 2018Updated 7 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆51Apr 12, 2019Updated 7 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆131Feb 3, 2026Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆434Mar 28, 2024Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 6 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- a computational tool for analyzing single cell Hi-C data☆26Apr 23, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- A collection of tools for Hi-C data analysis☆639Mar 22, 2026Updated last month
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- A modular Hi-C mapping pipeline☆102Dec 5, 2024Updated last year