databio / pepproLinks
A modular, containerized pipeline for PRO-seq data processing
☆11Updated 2 years ago
Alternatives and similar repositories for peppro
Users that are interested in peppro are comparing it to the libraries listed below
Sorting:
- ☆23Updated 11 months ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆31Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- Nascent Transcription Processing Pipeline☆21Updated 2 months ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆23Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- ☆33Updated 2 months ago
- ☆34Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- ☆18Updated last year
- Transcription Factor Enrichment Analysis☆36Updated 2 months ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago