BlanchetteLab / HIFI
Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
☆23Updated 2 years ago
Alternatives and similar repositories for HIFI:
Users that are interested in HIFI are comparing it to the libraries listed below
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆11Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆37Updated 5 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 9 months ago
- Reconstruction of focal amplifications with long reads☆20Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- ☆18Updated 2 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- ☆20Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆19Updated 8 months ago
- ☆16Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 4 months ago
- ☆12Updated 2 years ago
- ☆22Updated 4 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆33Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆23Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆23Updated 2 years ago