Alternatives and similar repositories for HIFI

Users that are interested in HIFI are comparing it to the libraries listed below

• dixonlab / hic_breakfinder
  ☆36Updated 6 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 8 months ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆24Updated 3 weeks ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 5 months ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 4 years ago
• zhongmicai / Hic_tools_collection
  ☆12Updated 6 years ago
• ucdavis-bioinformatics / proc10xG
  processing 10x genomics reads
  ☆26Updated 5 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 3 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆21Updated last month
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆47Updated 2 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆24Updated 5 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• srbehera / DRAGEN_Analysis
  ☆34Updated last year
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆63Updated 2 weeks ago
• sarahet / RLM
  Read level DNA methylation analysis of bisulfite converted sequencing data
  ☆18Updated 2 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆50Updated 2 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆49Updated last week
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 11 months ago