tariks / peakachu
Genome-wide contact analysis using sklearn
☆60Updated 10 months ago
Alternatives and similar repositories for peakachu:
Users that are interested in peakachu are comparing it to the libraries listed below
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆66Updated last year
- Lightweight converter between hic and cool contact matrices.☆68Updated 7 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆57Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆24Updated 3 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated 2 months ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆44Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Tutorial Website☆56Updated 4 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 3 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆81Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆78Updated 3 months ago
- Docker for 4DN Hi-C processing pipeline☆59Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆107Updated 2 weeks ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 10 months ago
- HiC uniform processing pipeline☆58Updated last year
- Micro-C QC and data analysis☆15Updated last year