tariks / peakachu
Genome-wide contact analysis using sklearn
☆64Updated last year
Alternatives and similar repositories for peakachu:
Users that are interested in peakachu are comparing it to the libraries listed below
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆64Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆71Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆68Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Lightweight converter between hic and cool contact matrices.☆70Updated 9 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆70Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 6 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 weeks ago
- ☆24Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 5 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆84Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆64Updated 5 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆111Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- Tutorial Website☆57Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆56Updated 3 weeks ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆46Updated last month
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆47Updated this week
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆79Updated 5 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆57Updated 8 months ago
- A modular Hi-C mapping pipeline☆93Updated 4 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago