a versatile and flexible pipeline for analysing different variants of ChIA-PET data
☆36Nov 25, 2024Updated last year
Alternatives and similar repositories for ChIA-PET2
Users that are interested in ChIA-PET2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆17Jan 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆26Jan 23, 2026Updated 2 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Jul 13, 2020Updated 5 years ago
- ☆20Jun 8, 2023Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Paired Genomic Loci Tool Suite☆35Nov 23, 2022Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆109Nov 12, 2025Updated 4 months ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆476Aug 31, 2025Updated 6 months ago
- Accurate and flexible loops calling tool for 3D genomic data.☆114May 19, 2022Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Visualization and analysis software for Hi-C data -☆288Aug 6, 2024Updated last year
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 4 months ago
- ☆27Sep 2, 2021Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆53Jun 17, 2025Updated 9 months ago
- ☆32Sep 28, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year