GuipengLi / ChIA-PET2Links
a versatile and flexible pipeline for analysing different variants of ChIA-PET data
☆34Updated 7 months ago
Alternatives and similar repositories for ChIA-PET2
Users that are interested in ChIA-PET2 are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆59Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Statistically Significant loops from HiChIP data☆43Updated last year
- DCC/DAC methylation pipeline source☆56Updated 4 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated 3 weeks ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- ☆49Updated 3 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 months ago
- Code for finding putative enhancers using Hi-C data☆28Updated 7 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated 2 weeks ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆25Updated 6 months ago