chia pet analysis software
☆25Jan 17, 2019Updated 7 years ago
Alternatives and similar repositories for mango
Users that are interested in mango are comparing it to the libraries listed below
Sorting:
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- ☆12Aug 28, 2020Updated 5 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Dec 16, 2022Updated 3 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- ☆23Jan 20, 2021Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 7 years ago
- SIP: Significant Interaction Peak caller☆16Apr 24, 2025Updated 10 months ago
- Extract data quickly from Juicebox via straw☆69Apr 6, 2025Updated 11 months ago
- ☆16Mar 16, 2017Updated 9 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆109Nov 12, 2025Updated 4 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 6 months ago
- ☆71Nov 21, 2025Updated 4 months ago
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆126Feb 3, 2026Updated last month
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Apr 12, 2019Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 4 years ago
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆476Aug 31, 2025Updated 6 months ago
- GENome Organisation Visual Analytics☆86Feb 3, 2026Updated last month
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year