dphansti / mangoLinks
chia pet analysis software
☆25Updated 6 years ago
Alternatives and similar repositories for mango
Users that are interested in mango are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- IDR☆30Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆17Updated 6 years ago
- ☆17Updated 5 years ago
- Genomic Association Tester☆32Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- ☆38Updated 4 years ago
- Chromatin States Map in mouse embryonic stem cell☆16Updated 7 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Updated 6 years ago