Snakemake pipeline for microexon discovery and quantification
☆21Jan 16, 2025Updated last year
Alternatives and similar repositories for MicroExonator
Users that are interested in MicroExonator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated last year
- scover☆23Nov 3, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated 3 weeks ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 4 months ago
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆19Dec 6, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- ☆20Jun 8, 2023Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated 11 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆14May 4, 2022Updated 4 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Apr 16, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 9 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 3 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆40Jul 3, 2025Updated 11 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆29Jul 16, 2022Updated 3 years ago
- CCB Skills Seminar (Fall 2023) - snakemake☆19Oct 16, 2023Updated 2 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago