hemberg-lab / MicroExonatorLinks
Snakemake pipeline for microexon discovery and quantification
☆20Updated 11 months ago
Alternatives and similar repositories for MicroExonator
Users that are interested in MicroExonator are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- TF analysis from epigenetic and Hi-C data☆19Updated 8 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆18Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- scover☆24Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- ☆19Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- ☆23Updated last year
- A toolkit for analyzing architectural stripes☆20Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆20Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Updated 3 years ago
- ☆12Updated 5 years ago
- ☆16Updated last year
- A collection of perl scripts for NGS analysis☆17Updated last year