hemberg-lab / MicroExonatorLinks
Snakemake pipeline for microexon discovery and quantification
☆20Updated 6 months ago
Alternatives and similar repositories for MicroExonator
Users that are interested in MicroExonator are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- scover☆23Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 4 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆19Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆33Updated 3 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- ☆16Updated last year
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- ☆30Updated 7 months ago