hemberg-lab / MicroExonator
Snakemake pipeline for microexon discovery and quantification
☆20Updated last month
Alternatives and similar repositories for MicroExonator:
Users that are interested in MicroExonator are comparing it to the libraries listed below
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- ☆16Updated 9 months ago
- ☆45Updated 7 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 10 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- scover☆23Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- ☆30Updated last month
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆19Updated 3 months ago
- ☆12Updated 3 years ago
- ☆23Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated this week
- ☆20Updated last year
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last week
- ☆28Updated 2 months ago
- ☆16Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week
- Analyzing chromatin accessibility data in R☆18Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 8 months ago