hemberg-lab / MicroExonatorLinks
Snakemake pipeline for microexon discovery and quantification
☆20Updated 5 months ago
Alternatives and similar repositories for MicroExonator
Users that are interested in MicroExonator are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scover☆23Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆49Updated 10 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆14Updated last year
- ☆28Updated 6 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- ☆19Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆22Updated last year
- ☆12Updated 4 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- simplified cellranger for long-read data☆19Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year