hemberg-lab / VASAseq_2022
This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
☆21Updated 3 years ago
Alternatives and similar repositories for VASAseq_2022:
Users that are interested in VASAseq_2022 are comparing it to the libraries listed below
- ☆45Updated 6 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆20Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆29Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 2 years ago
- ☆23Updated 4 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 7 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- ☆29Updated 3 weeks ago
- RAGE-seq scripts☆18Updated 3 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- ☆29Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆18Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆36Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Benchmarking long-read RNA-seq analysis tools☆26Updated this week
- The scripts used for the analyses in TOME project☆23Updated 2 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated last week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆22Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- scWGCNA☆56Updated 2 years ago