Alternatives and similar repositories for VASAseq_2022:

Users that are interested in VASAseq_2022 are comparing it to the libraries listed below

• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 2 years ago
• wenweixiong / MARVEL
  ☆45Updated 5 months ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆17Updated last month
• dzhakparov / GeneSelectR
  ☆19Updated 7 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆30Updated 3 years ago
• UPSUTER / GEMLI
  ☆29Updated 4 months ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆29Updated last month
• quadbio / RNAseq_tutorial
  ☆18Updated 3 months ago
• viannegao / ChromaFold
  ☆21Updated 3 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆17Updated last year
• ejarmand / comparative_epigenomic_motor_cortex
  ☆9Updated last month
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆24Updated 8 months ago
• ConesaLab / TCR_nextflow
  ☆12Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆26Updated 11 months ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 9 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆21Updated last year
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆27Updated 3 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated this week
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆22Updated last month
• KChen-lab / METAFlux
  ☆52Updated 6 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆18Updated 6 months ago