billgreenwald / pgltoolsLinks
Paired Genomic Loci Tool Suite
☆34Updated 3 years ago
Alternatives and similar repositories for pgltools
Users that are interested in pgltools are comparing it to the libraries listed below
Sorting:
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- chia pet analysis software☆25Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Cellsnake tool main repo☆36Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- Code for finding putative enhancers using Hi-C data☆28Updated 7 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 8 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆31Updated 3 years ago
- IDR☆31Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- PSI-Sigma☆39Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆23Updated 10 months ago
- Genome-wide contact analysis using sklearn☆72Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 10 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago