billgreenwald / pgltoolsLinks
Paired Genomic Loci Tool Suite
☆34Updated 3 years ago
Alternatives and similar repositories for pgltools
Users that are interested in pgltools are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- chia pet analysis software☆25Updated 7 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Red-C data processing☆15Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Updated 4 years ago
- Chromatin domains bursting with flavor☆12Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- ☆23Updated 11 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- IDR☆30Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- ☆23Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆37Updated 6 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago