billgreenwald / pgltoolsLinks
Paired Genomic Loci Tool Suite
☆32Updated 2 years ago
Alternatives and similar repositories for pgltools
Users that are interested in pgltools are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Code for finding putative enhancers using Hi-C data☆28Updated 7 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files