billgreenwald / pgltoolsLinks
Paired Genomic Loci Tool Suite
☆34Updated 3 years ago
Alternatives and similar repositories for pgltools
Users that are interested in pgltools are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- chia pet analysis software☆25Updated 7 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- IDR☆30Updated 2 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Red-C data processing☆15Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 11 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago