billgreenwald / pgltools
Paired Genomic Loci Tool Suite
☆30Updated last year
Related projects ⓘ
Alternatives and complementary repositories for pgltools
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated 3 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- chia pet analysis software☆25Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆16Updated last month
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- IDR☆30Updated last year
- Lightweight converter between hic and cool contact matrices.☆67Updated 4 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Red-C data processing☆13Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago