cyang235 / smooth-seqLinks
A pipeline for Smooth-seq data analysis.
☆10Updated 4 years ago
Alternatives and similar repositories for smooth-seq
Users that are interested in smooth-seq are comparing it to the libraries listed below
Sorting:
- Transposable element expression at unique loci in single cells with CELLO-seq☆10Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- ☆18Updated 5 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆15Updated 3 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆10Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 10 months ago
- ☆11Updated 7 years ago
- ☆12Updated 4 years ago
- A toolkit for analyzing architectural stripes☆20Updated 11 months ago
- ☆12Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆18Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- ☆11Updated 2 years ago
- CircSplice☆12Updated 6 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Whole genome workflows☆12Updated last year
- ☆10Updated 5 years ago