☆17Jan 3, 2019Updated 7 years ago
Alternatives and similar repositories for ataqc
Users that are interested in ataqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 10, 2026Updated last week
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 6 months ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Jun 16, 2023Updated 3 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 6 months ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆19Mar 16, 2020Updated 6 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 4 years ago
- Repo for scripts for Ludwig et al mtDNA genotyping☆16Nov 22, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated last month
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆97Dec 24, 2025Updated 7 months ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆254Aug 3, 2026Updated 2 weeks ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆11Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- An Optimized Nested TAD caller for Hi-C data☆26Jun 30, 2021Updated 5 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 7 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆28Jul 5, 2024Updated 2 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 5 years ago
- Anomaly Screening Applying Pseudowells (ASAP). FORCE Hackathon, Stavanger 18-19 September 2018.☆10Jan 11, 2019Updated 7 years ago
- ☆18Mar 12, 2024Updated 2 years ago