☆17Jan 3, 2019Updated 7 years ago
Alternatives and similar repositories for ataqc
Users that are interested in ataqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- ☆13Mar 16, 2026Updated last week
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 10 months ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 2 months ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 2 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Repo for scripts for Ludwig et al mtDNA genotyping☆16Nov 22, 2019Updated 6 years ago
- ☆20Jun 8, 2023Updated 2 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆18Mar 16, 2020Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Nov 12, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Dec 24, 2025Updated 3 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆241Updated this week
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 3 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆29Jul 5, 2024Updated last year
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Jun 14, 2023Updated 2 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Framework for running text mining tools on latest publications. Main page at:☆14Jul 13, 2022Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Anomaly Screening Applying Pseudowells (ASAP). FORCE Hackathon, Stavanger 18-19 September 2018.☆10Jan 11, 2019Updated 7 years ago