kundajelab / ataqc
☆17Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for ataqc
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆14Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Tutorial Website☆53Updated 3 years ago
- ☆15Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- ☆13Updated 7 years ago
- ☆27Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆15Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ATAC-seq Quality Control☆23Updated 3 weeks ago
- ☆37Updated 4 years ago
- ☆18Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated this week
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago