timplab / nanoNOMe
nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
☆18Updated 2 years ago
Alternatives and similar repositories for nanoNOMe:
Users that are interested in nanoNOMe are comparing it to the libraries listed below
- ☆23Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆11Updated 2 years ago
- ☆21Updated 2 months ago
- ☆17Updated 2 years ago
- ☆33Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Reconstruction of focal amplifications with long reads☆18Updated this week
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 2 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆19Updated 4 months ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 weeks ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated 3 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆29Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 11 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- General Use Scripts and Helper functions☆16Updated 6 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago