timplab / nanoNOMeLinks
nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
☆20Updated 3 years ago
Alternatives and similar repositories for nanoNOMe
Users that are interested in nanoNOMe are comparing it to the libraries listed below
Sorting:
- ☆23Updated 5 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆38Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- ☆13Updated 3 years ago
- ☆20Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- ☆27Updated 3 years ago
- ☆24Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆20Updated last week
- ☆11Updated 5 years ago
- Enabling differential allele-specific analysis☆11Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- ☆11Updated 3 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- isoCirc☆10Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆12Updated 3 weeks ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- End-guided RNA assembler☆15Updated last month
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 3 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last month
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago