nvictus / lavaburst
Chromatin domains bursting with flavor
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for lavaburst
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- Red-C data processing☆13Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- QC report generator for Hi-C pairs file☆10Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆24Updated this week
- ☆11Updated 6 months ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Updated 2 years ago
- ☆18Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆19Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- ☆20Updated 4 years ago
- chia pet analysis software☆25Updated 5 years ago
- A tool to assess the quality and distribution of genomic data☆16Updated 3 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- ☆17Updated 8 months ago