Alternatives and similar repositories for lavaburst

Users that are interested in lavaburst are comparing it to the libraries listed below

• yuelab / BUTLRTools
  ☆16Updated 8 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated 11 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated last year
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆12Updated 5 years ago
• gersteinlab / HiC-spector
  Spectral and reproducibility analysis of Hi-C contact maps
  ☆13Updated 4 years ago
• agalitsyna / RedClib
  Red-C data processing
  ☆15Updated 2 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• dphansti / mango
  chia pet analysis software
  ☆25Updated 6 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• agalitsyna / fontanka
  Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …
  ☆12Updated 2 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• tjs23 / nuc_processing
  Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools
  ☆15Updated last month
• qunhualilab / hicrep
  R package to evaluate reproducibility of Hi-C data
  ☆10Updated 2 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆30Updated last year
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 7 months ago
• songlab-cal / scquint
  ☆18Updated last year
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆29Updated 2 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆38Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆39Updated 4 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• yycunc / FIREcaller
  FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data
  ☆12Updated 2 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 9 months ago
• keleslab / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆12Updated 4 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆22Updated 2 months ago