Alternatives and similar repositories for lavaburst:

Users that are interested in lavaburst are comparing it to the libraries listed below

• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 4 months ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆21Updated last year
• yuelab / BUTLRTools
  ☆15Updated 8 years ago
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆11Updated 4 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• deeptools / HiCMatrix
  ☆13Updated 11 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆17Updated last year
• gersteinlab / HiC-spector
  Spectral and reproducibility analysis of Hi-C contact maps
  ☆12Updated 4 years ago
• ay-lab / HiCtrans
  HiCtrans is a pipeline to call translocations from Hi-C data
  ☆15Updated 3 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• ijuric / MAPS
  ☆18Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• yycunc / FIREcaller
  FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data
  ☆12Updated 2 years ago
• qunhualilab / hicrep
  R package to evaluate reproducibility of Hi-C data
  ☆10Updated 2 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆42Updated 2 years ago
• battle-lab / twn_tsn
  Transcriptome-wide network
  ☆16Updated 5 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago
• EricSDavis / mariner
  Explore the Hi-Cs
  ☆11Updated last year
• agalitsyna / fontanka
  Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …
  ☆11Updated last year
• scoutzxb / CscoreTool
  ☆20Updated 4 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆30Updated this week
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated last year
• MarioniLab / EmptyDrops2017
  Code for the empty droplet and cell detection project from the HCA Hackathon.
  ☆20Updated 6 years ago
• guifengwei / ChromHMM_mESC_mm10
  Chromatin States Map in mouse embryonic stem cell
  ☆15Updated 7 years ago
• tjs23 / nuc_processing
  Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools
  ☆16Updated 2 years ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆19Updated last year
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• TaoYang-dev / hicrep
  R package to evaluate the reproducibility of Hi-C data
  ☆26Updated last year