nvictus / lavaburst
Chromatin domains bursting with flavor
☆12Updated 5 years ago
Alternatives and similar repositories for lavaburst:
Users that are interested in lavaburst are comparing it to the libraries listed below
- A toolkit for analyzing architectural stripes☆19Updated 3 months ago
- Red-C data processing☆14Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- ☆15Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- QC report generator for Hi-C pairs file☆10Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated last year
- Spectral and reproducibility analysis of Hi-C contact maps☆12Updated 3 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆12Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆28Updated this week
- ☆18Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- Processing and plotting tools for genomics data☆20Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 11 months ago
- ☆21Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 6 years ago