guifengwei / ChromHMM_mESC_mm10View external linksLinks
Chromatin States Map in mouse embryonic stem cell
☆19Apr 11, 2018Updated 7 years ago
Alternatives and similar repositories for ChromHMM_mESC_mm10
Users that are interested in ChromHMM_mESC_mm10 are comparing it to the libraries listed below
Sorting:
- Chromatin State Maps in Mouse☆23May 16, 2018Updated 7 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Nov 25, 2024Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- ☆17Jan 3, 2019Updated 7 years ago
- ☆18Mar 12, 2024Updated last year
- ☆19Jun 8, 2023Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 7 years ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆86Oct 19, 2024Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 3 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated last year
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- Paired Genomic Loci Tool Suite☆34Nov 23, 2022Updated 3 years ago
- ☆16Mar 16, 2017Updated 8 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated 2 weeks ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Aug 28, 2015Updated 10 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated last month
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 8 months ago
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- ☆20Jan 27, 2021Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- ☆17Jun 5, 2019Updated 6 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Cooler demo using a Jupyter notebook Binder☆18Sep 24, 2020Updated 5 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆24Jan 23, 2026Updated 3 weeks ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 6 months ago
- ☆18Sep 6, 2022Updated 3 years ago
- Find CNVs in single cell sequencing data.☆18Apr 4, 2023Updated 2 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago