Alternatives and similar repositories for scGROseq

Users that are interested in scGROseq are comparing it to the libraries listed below

• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆17Updated last year
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆20Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 2 years ago
• neurogenomics / EnformerCelltyping
  Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…
  ☆15Updated 7 months ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated last year
• dbrg77 / ISSAAC-seq
  ☆19Updated 2 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 6 months ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆20Updated 5 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 4 months ago
• wangjuan001 / hicplus
  ☆13Updated 4 years ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated last year
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆42Updated 2 years ago
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• Henikoff / scCUT-Tag
  ☆18Updated 2 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• tanaylab / embflow
  ☆12Updated 3 years ago
• cxzhu / Paired-seq
  Paired-seq
  ☆15Updated last year
• aertslab / scATAC-seq_benchmark
  ☆19Updated 2 years ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆18Updated last week
• wenweixiong / MARVEL
  ☆54Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆39Updated 2 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆16Updated 3 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 11 months ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago