scGRO-seq analyses codes
☆13Jan 9, 2024Updated 2 years ago
Alternatives and similar repositories for scGROseq
Users that are interested in scGROseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A modular, containerized pipeline for PRO-seq data processing☆12Mar 6, 2026Updated 4 months ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆30Dec 13, 2024Updated last year
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆41Apr 30, 2025Updated last year
- A toolkit for analyzing architectural stripes☆22Dec 1, 2024Updated last year
- PHi-C: deciphering Hi-C data into polymer dynamics☆11Aug 12, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆20Jun 8, 2023Updated 3 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- A suite of regression-based tools for ribosome profiling data analysis☆10Oct 3, 2022Updated 3 years ago
- Nascent Transcription Processing Pipeline☆23Updated this week
- ☆20Sep 29, 2021Updated 4 years ago
- ☆16Apr 9, 2025Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆53Jun 17, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 7 months ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- ☆15Dec 19, 2025Updated 7 months ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- ☆12Nov 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆16Jun 3, 2025Updated last year
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 3 months ago
- ☆18Sep 6, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- ☆17Jul 29, 2025Updated 11 months ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆36Nov 6, 2025Updated 8 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago
- ☆17Apr 9, 2021Updated 5 years ago