soedinglab / MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
☆1,588Updated this week
Alternatives and similar repositories for MMseqs2:
Users that are interested in MMseqs2 are comparing it to the libraries listed below
- Foldseek enables fast and sensitive comparisons of large structure sets.☆924Updated last week
- Remote protein homology detection suite.☆564Updated 4 months ago
- AlphaFold2 non-docker setup☆353Updated last year
- Automatically exported from code.google.com/p/cdhit☆658Updated 2 years ago
- ColabFold on your local PC☆672Updated 2 weeks ago
- A comprehensive library for computational molecular biology☆762Updated last week
- HMMER: biological sequence analysis using profile HMMs☆338Updated last month
- Making Protein folding accessible to all!☆2,163Updated this week
- Get protein embeddings from protein sequences☆482Updated last year
- ☆551Updated last year
- The ViennaRNA Package☆327Updated 5 months ago
- Code for the ProteinMPNN paper☆1,205Updated 7 months ago
- Listing of papers about machine learning for proteins.☆1,594Updated 9 months ago
- ☆257Updated this week
- ☆702Updated 7 months ago
- User friendly and accurate binder design pipeline☆467Updated 2 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,119Updated last week
- Making Protein Design accessible to all via Google Colab!☆697Updated this week
- AutoDock Vina☆685Updated 2 weeks ago
- Prodigal Gene Prediction Software☆473Updated last year
- Scripts to download genomes from the NCBI FTP servers☆991Updated 7 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆353Updated 9 months ago
- ☆523Updated last year
- 🧬 gget enables efficient querying of genomic reference databases☆1,009Updated this week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,186Updated 2 months ago
- Genome-scale protein function classification☆316Updated last week
- Evolutionary couplings from protein and RNA sequence alignments☆258Updated 3 weeks ago
- Genomic Pre-trained Network☆252Updated last week
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆681Updated 2 years ago
- UniRep model, usage, and examples.☆347Updated 2 years ago