hsadasivan / mm2-ax
☆16Updated last year
Alternatives and similar repositories for mm2-ax:
Users that are interested in mm2-ax are comparing it to the libraries listed below
- ☆28Updated 6 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆25Updated 2 months ago
- ☆28Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- ☆14Updated 10 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆18Updated last month
- Linear-time de novo Long Read Assembler☆39Updated 3 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆51Updated 8 months ago
- crab go snap snap☆37Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- implicit pangenome graph☆52Updated this week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- ☆14Updated 2 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 6 months ago
- Phasing reads with secondary alignments☆17Updated 2 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆40Updated last month
- assembly evaluation tool☆34Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆32Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- ☆32Updated this week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 7 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 5 months ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago