☆17Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for mm2-ax
Users that are interested in mm2-ax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- A collection of papers on awesome genome acceleration, e.g., architectures, systems, and algorithms.☆11Jun 9, 2026Updated 4 months ago
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆17Jan 12, 2024Updated 2 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆33Oct 21, 2024Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Error correction of long reads☆16Jan 30, 2026Updated 9 months ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- ☆36Aug 18, 2024Updated 2 years ago
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 3 weeks ago
- ☆12Aug 17, 2024Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 8 months ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆59Jun 4, 2024Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated 2 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆17Dec 21, 2023Updated 2 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated 2 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- ☆20Nov 17, 2025Updated 11 months ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- A cookiecutter template for bioinformatics projects, inspired by cookiecutter-data-science and Snakemake Workflows.☆14Oct 7, 2022Updated 4 years ago
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- My submissions for the KDE Plasma 6 wallpaper competition.☆11Dec 3, 2023Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆62Apr 1, 2026Updated 7 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Nextflow Pipelines☆10Aug 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- ☆12Oct 25, 2026Updated last week
- ☆34Jul 13, 2026Updated 3 months ago
- Implement different variants of gradient descent in python using numpy☆11Apr 23, 2019Updated 7 years ago
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago
- Handy command line utility for Galaxy administrators☆24Oct 9, 2026Updated 3 weeks ago