hsadasivan / mm2-axLinks
☆17Updated 2 years ago
Alternatives and similar repositories for mm2-ax
Users that are interested in mm2-ax are comparing it to the libraries listed below
Sorting:
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆23Updated 2 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 6 months ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆69Updated last year
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 8 years ago
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits☆25Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆57Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- ☆35Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- ☆18Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆44Updated 2 years ago
- ☆30Updated last year
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Updated 2 years ago
- ☆67Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 4 months ago
- Assemblies from HPP Year 1 production☆79Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- Analysis of sequencing error profile for long read data.☆13Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- ☆31Updated 6 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Updated 2 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Pan-Genomic Matching Statistics☆54Updated last year