Bean061 / ptgaulLinks
chloroplast genome assembly using long reads data
☆13Updated last month
Alternatives and similar repositories for ptgaul
Users that are interested in ptgaul are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆26Updated last month
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 10 months ago
- ☆27Updated 7 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- Diploid genome assembly analysis tools☆14Updated 10 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 7 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- ☆15Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆21Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- ☆16Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- TD2☆14Updated 2 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago