douglasgscofield / PacBio-utilities
Collection of utilities for working with PacBio-based assemblies
☆13Updated 2 years ago
Alternatives and similar repositories for PacBio-utilities:
Users that are interested in PacBio-utilities are comparing it to the libraries listed below
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 3 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Convert HAL to VG☆22Updated 8 months ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing