Alternatives and similar repositories for RabbitVar:

Users that are interested in RabbitVar are comparing it to the libraries listed below

• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆26Updated 3 months ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• shilpagarg / sdip
  ☆10Updated 4 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 8 months ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• jts / mbtools
  ☆13Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 4 years ago
• piyuranjan / SNIKT
  Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…
  ☆16Updated last year
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• ktan8 / nanopore_telomere_basecall
  ☆14Updated last year
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated this week
• VGP / vgp-tools
  ☆28Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 8 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated 2 months ago
• CMU-SAFARI / AirLift
  AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…
  ☆27Updated 8 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆39Updated 3 weeks ago