An Fast variant calling tool to detection germline and somatic variants
☆12Feb 21, 2026Updated 3 months ago
Alternatives and similar repositories for RabbitVar
Users that are interested in RabbitVar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- ☆17Apr 6, 2023Updated 3 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54May 10, 2026Updated last month
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 3 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 6 months ago
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 3 months ago
- ☆15Dec 8, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 9 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scoring GT/AG sites for improving spliced alignment☆55Nov 10, 2025Updated 7 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 2 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Matlab implementations of communication-avoiding Krylov subspace methods☆12Sep 2, 2021Updated 4 years ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Oct 26, 2020Updated 5 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- Aligns short reads using dynamic seed size with strobemers☆198Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Jan 22, 2026Updated 4 months ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 7 months ago
- K-mer substring space decomposition☆44May 27, 2026Updated 2 weeks ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated 3 weeks ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ☆10May 7, 2026Updated last month
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated last month
- Genomic sequence aligner☆33May 29, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- ☆13Jul 17, 2024Updated last year
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- ☆20Nov 17, 2025Updated 6 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago