Alternatives and similar repositories for RabbitVar

Users that are interested in RabbitVar are comparing it to the libraries listed below

• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆31Updated 6 months ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆20Updated 2 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• Minimap2onGPU / mm2-gb
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆23Updated 3 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated 2 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 8 months ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆14Updated last year
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 8 months ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• hitbc / LAMSA
  Long Approximate Matches-based Split Aligner
  ☆13Updated 8 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 5 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆28Updated last year
• hitbc / gcSV
  ☆21Updated 9 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆44Updated 3 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆46Updated 3 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• jts / mbtools
  ☆14Updated 2 years ago
• tprodanov / locityper
  Targeted genotyper for complex polymorphic genes
  ☆31Updated this week
• yangao07 / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆33Updated last year